PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004500946.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family E2F/DP
Protein Properties Length: 382aa    MW: 43185.7 Da    PI: 6.1946
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004500946.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP85.63.8e-27115180171
         E2F_TDP   1 rkeksLrlltqkflkllekseegivtlnevakeLvsedvknkrRRiYDilNVLealnliekkekneirwkg 71 
                     r+++sL+llt+kf++l++ +++g+++ln+ a+ L   +v  ++RRiYDi+NVLe+++liek++kn+irwkg
  XP_004500946.1 115 RYDSSLGLLTKKFVSLIQDAKDGTLDLNQTAEVL---EV--QKRRIYDITNVLEGIGLIEKTSKNHIRWKG 180
                     6899******************************...99..****************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.104.7E-29112181IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467851.36E-17115178IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013722.2E-35115180IPR003316E2F/DP family, winged-helix DNA-binding domain
PfamPF023191.9E-25117180IPR003316E2F/DP family, winged-helix DNA-binding domain
SuperFamilySSF1440747.85E-25191297No hitNo description
CDDcd146601.02E-30191298No hitNo description
PfamPF164212.4E-22196295IPR032198E2F transcription factor, CC-MB domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000902Biological Processcell morphogenesis
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0042023Biological ProcessDNA endoreduplication
GO:0051782Biological Processnegative regulation of cell division
GO:0005667Cellular Componenttranscription factor complex
GO:0005730Cellular Componentnucleolus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 382 aa     Download sequence    Send to blast
MSTTTPSGED RIEPPLIPHH FSQFKFDLCH SPSPHFTILP LSQRNEINNV KLHACNVEAF  60
PTHQSNTVNL PPSIQTEPIQ RRKLNGKSKV SRNAKSASKR SNTESPNSTA VNNCRYDSSL  120
GLLTKKFVSL IQDAKDGTLD LNQTAEVLEV QKRRIYDITN VLEGIGLIEK TSKNHIRWKG  180
CDGLGPRELE DQVNALKAEV ENLYDEECKL EECISKKKEL IQNLEKGENS QKYLFFTKED  240
ILTLPCFQNK QLIAIKAPKA SFIEVPDPDE ELGFHQRQYR MIVRSATGPI TLYLLNKHDH  300
KFEGVSVKQA KLMDPSWSSN NLRMEDMEIL ESQGCEKNPS GNLGSLGSEA FGIQQITPTD  360
FDVDNDYWFQ SDPNVGLTQL WG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1cf7_A4e-25114181674PROTEIN (TRANSCRIPTION FACTOR E2F-4)
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00190DAPTransfer from AT1G47870Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004500946.10.0PREDICTED: transcription factor E2FC isoform X1
TrEMBLV7ATY81e-178V7ATY8_PHAVU; Uncharacterized protein
STRINGGLYMA04G02720.31e-175(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF118852529
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G47870.24e-93E2F/DP family protein